Basic Information
Locus ID:
TC02G0111
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5085522 | 5089633 | - | TC02G0111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 73,606.73 Da | 30.39 | 71.84 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 331 | 430 | 5.22791E-30 | IPR029413 |
| CDD | cd10317 | RGL4_C | 442 | 628 | 2.81704E-55 | - |
| CDD | cd10320 | RGL4_N | 6 | 297 | 4.13949E-76 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 200 | 7.3E-93 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 440 | 627 | 9.9E-56 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 354 | 425 | 2.0E-23 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 437 | 628 | 1.11E-50 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 331 | 422 | 2.35E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 12 | 291 | 1.41E-8 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 6 | 303 | 2.8E-11 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 438 | 628 | 7.7E-20 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 330 | 425 | 1.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_050234926.1 | probable rhamnogalacturonate lyase B [Mercurialis annua] | 0 |
| Q8RJP2 | Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=rhiE PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LK80 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology