Basic Information
Locus ID:
TC01G4483
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 160513586 | 160525692 | + | TC01G4483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 104,163.62 Da | 46.35 | 83.93 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 754 | 910 | 2.6169E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 319 | 909 | 5.7E-85 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 43 | 144 | 2.9E-23 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 18 | 144 | 2.09E-28 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 316 | 912 | 2.55E-111 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 158 | 242 | 7.3E-10 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 8 | 157 | 2.4E-35 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 649 | 918 | 5.2E-58 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 302 | 527 | 4.1E-66 | - |
| SMART | SM00695 | dusp | 38 | 147 | 6.1E-29 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 19 | 144 | 19.107927 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 318 | 912 | 58.628761 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 319 | 334 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 854 | 871 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_034673030.1 | ubiquitin carboxyl-terminal hydrolase 9-like isoform X1 [Vitis riparia] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8YSW4 | Ubiquitin carboxyl-terminal hydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology