Basic Information
Locus ID:
TC01G4251
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 153132324 | 153146415 | + | TC01G4251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 116,584.69 Da | 41.70 | 78.16 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 914 | 946 | 0.036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 867 | 901 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 824 | 862 | 0.018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 740 | 1052 | 2.36E-51 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 284 | 553 | 2.94E-13 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 714 | 1054 | 7.9E-126 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 284 | 564 | 5.3E-17 | - |
| SMART | SM00320 | WD40_4 | 780 | 819 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1013 | 1052 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 822 | 862 | 5.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 957 | 996 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 904 | 5.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 725 | 769 | 0.96 | IPR001680 |
| SMART | SM00320 | WD40_4 | 908 | 946 | 7.9E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 948 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 955 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 829 | 871 | 9.906923 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 933 | 947 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 849 | 863 | 7.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 806 | 820 | 7.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 933 | 947 | 7.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 41 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_019104957.2 | protein SPA1-RELATED 2 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7J7CJG9 | Protein SPA1-RELATED 2 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00652 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology