Basic Information
Locus ID:
TC01G4052
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 147334441 | 147339949 | - | TC01G4052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 33,112.96 Da | 42.80 | 72.60 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 66 | 6.0E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 89 | 1.15E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 80 | 7.6E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 9.5E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.537011 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 264 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021295031.1 | binding partner of ACD11 1-like [Herrania umbratica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3I452 | RRM domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_15057 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology