Basic Information
Locus ID:
TC01G3734
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
BOI-related E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 137436402 | 137437929 | - | TC01G3734 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 41,435.52 Da | 58.14 | 70.13 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 335 | 371 | 5.1E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 312 | 383 | 6.1E-12 | IPR013083 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 1 | 48 | 16.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 55 | 383 | 1.4E-85 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 336 | 370 | 9.538678 | IPR001841 |
| Coils | Coil | Coil | 238 | 293 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32740.2 | - | 0 |
| RefSeq | XP_016443981.1 | PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like [Nicotiana tabacum] | 0 |
| O81851 | E3 ubiquitin-protein ligase BOI OS=Arabidopsis thaliana OX=3702 GN=BOI PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7A3B7 | Putative BOI-related E3 ubiquitin-protein ligase 1-like OS=Davidia involucrata OX=16924 GN=Din_020285 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14153, jg34058 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2065 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004173 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105630 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24405, Sbi_jg8242 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11780 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001580 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl51519, Sgl56804, Sgl56805 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007305, gene:ENSEOMG00000021890 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0003340, CQ.Regalona.r1.5BG0003490 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30141530 |
| Apiaceae | Apium graveolens | 2 | Ag11G03828, Ag6G00752 |
| Arecaceae | Cocos nucifera | 6 | COCNU_03G005620, COCNU_07G004460, COCNU_08G008380 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103704628, gene-LOC103706427, gene-LOC103710759 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1261.V1.1, AsparagusV1_08.352.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G06070, Ftri14G08274, Ftri3G22548 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G32740.1, AT4G17680.1, AT5G47050.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000973m.g.v1.0, Thhalv10008231m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g28230.v2.2, Sp2g11860.v2.2, Sp7g16460.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g063760.2N, BniB02g072540.2N, BniB04g010570.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0784 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0573 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g04220, gene.Cymno18g03340 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g04210, gene.Thate08g08780 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11354 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1086 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08676, Lb2G10545, Lb4G25580 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2856, AH07.3040, BH01.3194, BH07.2864, CH01.3433 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0117150, gene-QOZ80_2AG0141320 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0057290.1, HORVU.MOREX.r3.6HG0605060.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_012781, gene-QYE76_024508, gene-QYE76_024550 |
| Poaceae | Oryza coarctata | 4 | Oco03G018490, Oco04G019230, Oco19G010520, Oco20G010350 |
| Poaceae | Oryza sativa | 4 | LOC_Os02g46220.1, LOC_Os03g03490.1, LOC_Os10g41580.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G281400, gene-BS78_04G235200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203779, Pt_Chr0203794, Pt_Chr0503244, Pt_Chr0503287 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G004850, Chr06G027430, Chr09G005410, Chr09G023190 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G366400, Tel6E01G486100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG032540, gene_TRIDC6AG040200 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G215300.1, TraesCS1B02G228800.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb023970_P001, Zm00001eb103430_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22226, nbis-gene-36404, nbis-gene-38046 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12940, Zma_g14154, Zma_g15711, Zma_g16902 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3134, evm.TU.LG10.810, evm.TU.LG16.512 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g05880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.465, evm.TU.Scaffold_16_RagTag.413 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17895, nbisL1-mrna-22667 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3830, nbisL1-mrna-5651 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20126, nbisL1-mrna-8271 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.100, evm.TU.utg000022l.245 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014239, Maker00018604 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16209, nbisL1-mrna-3386 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10641, nbisL1-mrna-6466 |
| Salicaceae | Populus euphratica | 2 | populus_peu03101, populus_peu33973 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132609758, gene-LOC132635220, gene-LOC132640713 |
| Solanaceae | Solanum chilense | 3 | SOLCI000363400, SOLCI003998700, SOLCI007181500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023755, gene-LOC107028844 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16230_chr06_-, STRG.23857_chr05_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3734, TC09G0392 |
| Zosteraceae | Zostera marina | 1 | Zosma06g05640.v3.1 |