Basic Information
Locus ID:
TC01G3724
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 137023214 | 137123801 | - | TC01G3724 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 468,005.78 Da | 41.33 | 90.33 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2715 | 2807 | 7.7E-7 | IPR010482 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 428 | 646 | 6.6E-30 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2046 | 2205 | 5.2E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1838 | 1986 | 2.4E-10 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 4 | 245 | 3.0E-68 | IPR031646 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3169 | 3331 | 9.4E-13 | IPR009543 |
| SUPERFAMILY | SSF50729 | PH domain-like | 661 | 793 | 5.17E-8 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 649 | 775 | 1.3E-5 | IPR011993 |
| SMART | SM00233 | PH_update | 665 | 778 | 5.5E-6 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 664 | 776 | 8.5345 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_010664169.1 | PREDICTED: uncharacterized protein LOC100260794 [Vitis vinifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZTK8 | PH domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_012573 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology