Basic Information
Locus ID:
TC01G3600
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 133015204 | 133020229 | - | TC01G3600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 65,618.14 Da | 53.84 | 70.66 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 364 | 493 | 3.85461E-64 | - |
| CDD | cd00201 | WW | 17 | 46 | 1.60301E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 376 | 484 | 9.3E-35 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 169 | 338 | 8.5E-51 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 9 | 48 | 3.08E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 217 | 501 | 6.33E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 120 | 352 | 4.0E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 353 | 524 | 9.2E-60 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 11 | 54 | 3.1E-5 | - |
| SMART | SM00487 | ultradead3 | 164 | 367 | 2.9E-66 | IPR014001 |
| SMART | SM00456 | ww_5 | 15 | 48 | 2.3E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 404 | 484 | 2.5E-33 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 145 | 173 | 10.928784 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 14 | 48 | 10.915601 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 176 | 350 | 31.508999 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 379 | 523 | 25.516842 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 20 | 46 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 296 | 304 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 588 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_018823062.1 | DEAD-box ATP-dependent RNA helicase 14 isoform X1 [Juglans regia] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4EUH5 | DEAD-box ATP-dependent RNA helicase 14 isoform X1 OS=Juglans regia OX=51240 GN=LOC108992842 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology