Basic Information
Locus ID:
TC01G3598
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 132967502 | 132968624 | + | TC01G3598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 35,797.39 Da | 56.14 | 67.21 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 164 | 205 | 5.06266E-23 | - |
| Pfam | PF13639 | Ring finger domain | 163 | 205 | 9.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 211 | 3.53E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 211 | 5.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 164 | 204 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 205 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 303 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68180.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_007224716.2 | probable E3 ubiquitin-protein ligase RHC1A [Prunus persica] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J5W9E2 | RING-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS10459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12907 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah033634, Ah033635 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g037760 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19648, Sbi_jg44533 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17387 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024057 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl21201, Sgl26540, Sgl63713, Sgl68214 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000020524 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0009950, CQ.Regalona.r1.2BG0011810 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G05704 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G68180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019221m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g23180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g045510.2N, BniB05g064720.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002026 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2006, evm.TU.LG06.323 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.9439_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3598 |