Basic Information
Locus ID:
TC01G3392
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 126522389 | 126554940 | + | TC01G3392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 113,871.02 Da | 40.21 | 83.27 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 37 | 313 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 354 | 446 | 9.1E-21 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 889 | 995 | 6.7E-10 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 596 | 807 | 2.6E-46 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 38 | 349 | 8.1E-95 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 26 | 350 | 8.01E-108 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 353 | 447 | 5.23E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 455 | 999 | 2.04E-139 | IPR011013 |
| Gene3D | G3DSA:2.70.98.30 | - | 592 | 855 | 4.9E-90 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 396 | 452 | 4.6E-21 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 874 | 1004 | 3.2E-34 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 318 | 395 | 6.7E-29 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 475 | 591 | 9.6E-29 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 37 | 317 | 7.0E-125 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 354 | 428 | 3.2E-22 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010682967.2 | alpha-mannosidase At3g26720 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7CBJ8 | Alpha-mannosidase OS=Davidia involucrata OX=16924 GN=Din_047212 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology