Basic Information
Locus ID:
TC01G3180
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 118180590 | 118191433 | + | TC01G3180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 104,226.61 Da | 47.26 | 90.98 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 659 | 792 | 3.18083E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 661 | 791 | 1.2E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 815 | 857 | 1.2E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 621 | 857 | 2.38E-59 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 793 | 863 | 8.3E-96 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 620 | 792 | 8.3E-96 | IPR027417 |
| SMART | SM00382 | AAA_5 | 657 | 794 | 1.7E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 764 | 783 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 572 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_010676390.2 | ribosome biogenesis ATPase RIX7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7ZZ25 | Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1a PE=2 SV=2 | 0 | |
| TrEMBL | A0A2R6PHW5 | Spastin like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc28808 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology