Basic Information
Locus ID:
TC01G3003
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase RNF182-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 111907213 | 111909420 | - | TC01G3003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 33,464.58 Da | 55.64 | 98.08 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 74 | 113 | 3.1E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 73 | 131 | 1.11E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 165 | 1.3E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 74 | 129 | 9.715714 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 93 | 102 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 211 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021866329.1 | uncharacterized protein LOC110805035 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9RNN5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_046410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology