Basic Information
Locus ID:
TC01G2620
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 99128729 | 99130578 | + | TC01G2620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 31,742.74 Da | 50.57 | 69.97 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 76 | 127 | 2.42567E-21 | - |
| Pfam | PF13445 | RING-type zinc-finger | 78 | 123 | 2.9E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 138 | 1.41E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 141 | 8.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 78 | 125 | 5.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 78 | 126 | 12.533537 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 93 | 102 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_028071696.1 | E3 ubiquitin-protein ligase RMA1H1-like [Camellia sinensis] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AAP0 | RING-type E3 ubiquitin transferase OS=Nyssa sinensis OX=561372 GN=F0562_008406 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology