Basic Information
Locus ID:
TC01G2577
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 98106466 | 98113853 | + | TC01G2577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 99,013.42 Da | 43.57 | 79.76 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 56 | 248 | 4.00635E-23 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 401 | 453 | 6.3E-10 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 17 | 397 | 2.3E-108 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 458 | 534 | 8.0E-7 | IPR007010 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 249 | 397 | 1.52E-63 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 401 | 526 | 4.9E-36 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 140 | 247 | 2.45E-26 | IPR043519 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 13 | 103 | 1.06E-15 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 17 | 48 | 5.4E-22 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 243 | 396 | 1.8E-124 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 401 | 516 | 3.3E-26 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 139 | 242 | 1.8E-124 | IPR043519 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 49 | 103 | 5.4E-22 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 756 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021776422.1 | LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Chenopodium quinoa] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N4A6 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology