Basic Information
Locus ID:
TC01G2453
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 93364372 | 93365538 | + | TC01G2453 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 43,706.43 Da | 51.39 | 85.23 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 247 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 338 | 0.055 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 68 | 343 | 1.43E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 54 | 387 | 2.0E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 161 | 206 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 338 | 6.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 247 | 6.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 305 | 341 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 305 | 341 | 8.913786 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 325 | 339 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_031288216.1 | WD repeat-containing protein LWD1 [Pistacia vera] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | V4TI63 | WD_REPEATS_REGION domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10015815mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology