Basic Information
Locus ID:
TC01G2430
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 92250527 | 92251529 | + | TC01G2430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 27,165.20 Da | 57.20 | 58.47 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 196 | 238 | 1.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 241 | 1.79E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 240 | 2.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 237 | 1.1E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 238 | 13.477729 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 76 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58720.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_028065721.1 | E3 ubiquitin-protein ligase DZIP3 isoform X1 [Camellia sinensis] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A061ECA4 | RING/U-box superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_008926 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38190 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11987, Sbi_jg46916 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21204 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009545 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl82856 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000051964 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0012950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30089060 |
| Apiaceae | Apium graveolens | 1 | Ag4G02096 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G002410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708969 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.958.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G23667, Ftri8G13369 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G58720.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006182m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g04130.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g054720.2N, BniB08g073260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2896 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3018 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g09360 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g08430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1679 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.1652, BH03.1802 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0532860 |
| Poaceae | Oryza coarctata | 1 | Oco18G002870 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g17610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G158100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G011750, Chr11G010570 |
| Poaceae | Zea mays | 1 | Zm00001eb098400_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19852 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32543 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1034, evm.TU.LG11.228 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g02440 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1853, nbisL1-mrna-4851 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11172 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013379 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616713 |
| Solanaceae | Solanum chilense | 1 | SOLCI005367400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024596 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8243_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2430 |