Basic Information
Locus ID:
TC01G2388
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 90793331 | 90807566 | - | TC01G2388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 90,626.60 Da | 38.29 | 86.47 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 297 | 9.43065E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 12 | 44 | 0.027 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 671 | 827 | 4.5E-48 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 105 | 139 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 187 | 223 | 1.2E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 181 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 265 | 4.3E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 346 | 5.86E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 202 | 9.7E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 203 | 413 | 2.1E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 142 | 181 | 1.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 184 | 223 | 5.3E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 306 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 100 | 139 | 7.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 265 | 5.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 0.0013 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 191 | 228 | 14.371031 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 274 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 233 | 268 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 191 | 232 | 18.796164 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 149 | 183 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 44 | 8.65015 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 149 | 190 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 107 | 148 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 107 | 141 | 11.497408 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 252 | 266 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 210 | 224 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 252 | 266 | 5.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 168 | 182 | 5.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 210 | 224 | 5.7E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 831 | 19.692924 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 388 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021841902.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Spinacia oleracea] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RHA8 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_071810 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology