Basic Information
Locus ID:
TC01G2384
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 90623940 | 90635238 | - | TC01G2384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 59,996.75 Da | 41.37 | 94.92 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 216 | 508 | 3.68427E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 338 | 0.055 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 508 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 250 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 296 | 0.038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 427 | 465 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 210 | 508 | 7.94E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 473 | 2.2E-58 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 474 | 525 | 1.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 340 | 380 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 338 | 0.0074 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 509 | 4.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 466 | 0.51 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 212 | 251 | 3.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 420 | 59.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 21 | 53 | 8.839518 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 54 | 110 | 8.881407 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 305 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 476 | 511 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 476 | 511 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 219 | 260 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 301 | 9.783781 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 219 | 253 | 10.574686 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 238 | 252 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 238 | 252 | 3.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 496 | 510 | 3.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 453 | 467 | 3.5E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_034200382.1 | WD repeat-containing protein 26 homolog [Prunus dulcis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z6X1 | Putative WD repeat-containing protein 26-like OS=Davidia involucrata OX=16924 GN=Din_008234 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology