Basic Information
Locus ID:
TC01G2338
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 89216528 | 89225410 | + | TC01G2338 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 29,184.72 Da | 42.78 | 56.06 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 61 | 194 | 1.16654E-55 | - |
| Pfam | PF00628 | PHD-finger | 178 | 226 | 2.7E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 61 | 173 | 6.7E-24 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 168 | 227 | 4.21E-19 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 21 | 171 | 1.9E-30 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 172 | 238 | 1.9E-20 | IPR013083 |
| SMART | SM00439 | BAH_4 | 59 | 174 | 5.0E-40 | IPR001025 |
| SMART | SM00249 | PHD_3 | 178 | 225 | 4.8E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 176 | 227 | 9.3298 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 59 | 174 | 23.724461 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 179 | 224 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 254 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_021890098.1 | chromatin remodeling protein EBS-like isoform X1 [Carica papaya] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A067EGT8 | Chromatin remodeling protein EBS-like OS=Citrus sinensis OX=2711 GN=CISIN_1g027093mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology