Basic Information
Locus ID:
TC01G2252
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 86508358 | 86517479 | - | TC01G2252 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 134,369.77 Da | 38.87 | 99.61 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 128 | 146 | 1.4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 328 | 351 | 0.27 | IPR002885 |
| Pfam | PF00646 | F-box domain | 701 | 738 | 6.5E-7 | IPR001810 |
| Pfam | PF08387 | FBD | 1121 | 1160 | 5.3E-7 | IPR006566 |
| Pfam | PF13041 | PPR repeat family | 353 | 400 | 3.1E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 253 | 300 | 6.6E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 152 | 197 | 1.9E-7 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 527 | 628 | 2.8E-26 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 50 | 97 | 4.6E-9 | IPR002885 |
| SUPERFAMILY | SSF52047 | RNI-like | 843 | 1159 | 2.63E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 700 | 745 | 3.27E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 774 | 1085 | 1.8E-9 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 106 | 204 | 1.9E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 105 | 7.7E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 205 | 319 | 9.5E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 320 | 547 | 4.0E-36 | IPR011990 |
| Gene3D | G3DSA:1.20.1280.50 | - | 700 | 742 | 6.0E-6 | - |
| SMART | SM00579 | 9598neu4hmm | 1121 | 1195 | 6.8E-11 | IPR006566 |
| SMART | SM00256 | fbox_2 | 705 | 746 | 9.3E-4 | IPR001810 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 391 | 423 | 2.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 356 | 389 | 1.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 54 | 87 | 1.3E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 154 | 188 | 5.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 257 | 289 | 1.1E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 51 | 85 | 10.380408 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 389 | 423 | 10.358486 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 253 | 287 | 12.024604 | IPR002885 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 699 | 747 | 10.663223 | IPR001810 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 152 | 186 | 11.794416 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 354 | 388 | 9.96388 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 777 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12770.1 | mitochondrial editing factor 22. Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing. | 0 |
| RefSeq | XP_023901365.1 | pentatricopeptide repeat-containing protein At3g12770 [Quercus suber] | 0 |
| Q9LTV8 | Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1 | 0 | |
| TrEMBL | A0A438CUC7 | Pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 GN=PCMP-H43_6 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18961 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20988 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018990 |
| Apiaceae | Apium graveolens | 1 | Ag3G00232 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC113463499 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G11991, Ftri13G21589 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009938m.g.v1.0, Thhalv10029130m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g055710.2N, BniB08g038980.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2490 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2585 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1992 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010082, Pov_00037775 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12478 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.763, evm.TU.LG20.1138 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g02340, gene.Posoc10g02360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1321 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20846 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8750 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21298 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.811 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1244 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4759 |
| Salicaceae | Populus euphratica | 2 | populus_peu02891, populus_peu16959 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619043 |
| Solanaceae | Solanum chilense | 1 | SOLCI002847700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025251 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14682 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2252 |