Basic Information
Locus ID:
TC01G2052
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Casein kinase II subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 80146924 | 80169018 | + | TC01G2052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 65,305.24 Da | 32.62 | 92.05 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14132 | STKc_CK2_alpha | 112 | 541 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 416 | 541 | 9.5E-15 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 131 | 287 | 2.3E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 104 | 541 | 1.62E-65 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 205 | 547 | 1.0E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 117 | 204 | 3.8E-44 | - |
| SMART | SM00220 | serkin_6 | 131 | 546 | 2.1E-51 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 131 | 547 | 35.424763 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 244 | 256 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 137 | 160 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko03008 (Ribosome biogenesis in eukaryotes)
map03008 (Ribosome biogenesis in eukaryotes)
map04064 (NF-kappa B signaling pathway)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04520 (Adherens junction)
map04520 (Adherens junction)
ko04712 (Circadian rhythm - plant)
map04712 (Circadian rhythm - plant)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67380.1 | casein kinase alpha 1. casein kinase II catalytic subunit alpha | 0 |
| RefSeq | XP_006426052.1 | casein kinase II subunit alpha-2 isoform X1 [Citrus clementina] | 0 |
| Q08467 | Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=CKA1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A067GH58 | Protein kinase domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g014406mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology