Basic Information
Locus ID:
TC01G2010
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 78470695 | 78477428 | - | TC01G2010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 71,348.33 Da | 40.40 | 72.66 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 431 | 619 | 8.06782E-51 | - |
| CDD | cd10320 | RGL4_N | 2 | 282 | 4.11585E-69 | - |
| CDD | cd10316 | RGL4_M | 320 | 419 | 2.57538E-30 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 2 | 189 | 4.2E-70 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 429 | 617 | 9.3E-53 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 343 | 415 | 3.8E-22 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 9 | 282 | 1.54E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 426 | 619 | 4.42E-48 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 363 | 419 | 2.16E-7 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 427 | 618 | 2.0E-16 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 1 | 292 | 5.4E-13 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 320 | 416 | 6.2E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021853123.1 | probable rhamnogalacturonate lyase B isoform X2 [Spinacia oleracea] | 0 |
| TrEMBL | A0A803MBF5 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology