halophFGD

Basic Information

Locus ID: TC01G2007

Species & Taxonomic ID: Tamarix chinensis & 189791

Genome Assembly: GCA_030549775.1

Description: Rhamnogalacturonate lyase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	78353569	78359446	-	TC01G2007

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.68	79,319.29 Da	34.46	73.52	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10316	RGL4_M	385	486	1.77395E-29	IPR029413
CDD	cd10320	RGL4_N	65	347	3.92049E-60	-
CDD	cd10317	RGL4_C	498	691	6.38638E-53	-
Pfam	PF14683	Polysaccharide lyase family 4, domain III	496	690	3.3E-52	IPR029411
Pfam	PF14686	Polysaccharide lyase family 4, domain II	410	482	2.2E-21	IPR029413
Pfam	PF06045	Rhamnogalacturonate lyase family	65	254	2.7E-60	IPR010325
SUPERFAMILY	SSF49452	Starch-binding domain-like	382	486	5.1E-11	IPR013784
SUPERFAMILY	SSF49785	Galactose-binding domain-like	493	691	3.83E-48	IPR008979
SUPERFAMILY	SSF74650	Galactose mutarotase-like	64	346	2.04E-8	IPR011013
Gene3D	G3DSA:2.60.120.260	-	493	691	2.0E-15	-
Gene3D	G3DSA:2.70.98.10	-	62	350	6.0E-16	IPR014718
Gene3D	G3DSA:2.60.40.1120	-	382	485	2.2E-8	-

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0030246 (carbohydrate binding)

KEGG Pathway

KO Term:

K18195 (rhamnogalacturonan endolyase [EC:4.2.2.23])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G09910.1	Rhamnogalacturonate lyase family protein.
RefSeq	XP_021853123.1	probable rhamnogalacturonate lyase B isoform X2 [Spinacia oleracea]
TrEMBL	A0A2I4GF30	rhamnogalacturonan endolyase OS=Juglans regia OX=51240 GN=LOC109004812 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	13	jg17084, jg17085, jg17086, jg17087, jg20026, jg22654, jg6148 ... jg22655, jg31052, jg39575, jg39576, jg39578, jg39579
Aizoaceae	Mesembryanthemum crystallinum	8	gene_1155, gene_1172, gene_1173, gene_1174, gene_16432 ... gene_16434, gene_16544, gene_23028
Amaranthaceae	Atriplex hortensis	8	Ah003916, Ah012884, Ah012890, Ah023583, Ah023584, Ah023585 ... Ah023586, Ah023590
Amaranthaceae	Beta vulgaris	6	BVRB_1g005340, BVRB_1g005360, BVRB_1g005370, BVRB_1g005420 ... BVRB_6g152770, BVRB_6g152780
Amaranthaceae	Salicornia bigelovii	13	Sbi_jg28933, Sbi_jg28936, Sbi_jg28938, Sbi_jg28941 ... Sbi_jg28954, Sbi_jg2985, Sbi_jg2993, Sbi_jg2996, Sbi_jg2998, Sbi_jg2999, Sbi_jg42349, Sbi_jg42352, Sbi_jg44932
Amaranthaceae	Salicornia europaea	7	Seu_jg27199, Seu_jg27201, Seu_jg6887, Seu_jg6888, Seu_jg6890 ... Seu_jg6891, Seu_jg6897
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000935, GOSA_00000936, GOSA_00000937, GOSA_00000945 ... GOSA_00002327, GOSA_00002328
Amaranthaceae	Suaeda glauca	12	Sgl11835, Sgl11839, Sgl11840, Sgl11842, Sgl15932, Sgl15936 ... Sgl15937, Sgl15939, Sgl31910, Sgl31911, Sgl37188, Sgl37189
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000001165, gene:ENSEOMG00000013789 ... gene:ENSEOMG00000014412, gene:ENSEOMG00000015320, gene:ENSEOMG00000024504, gene:ENSEOMG00000035050, gene:ENSEOMG00000035291, gene:ENSEOMG00000035674, gene:ENSEOMG00000047761
Amaranthaceae	Chenopodium quinoa	11	CQ.Regalona.r1.1AG0009720, CQ.Regalona.r1.1AG0009730 ... CQ.Regalona.r1.1AG0009770, CQ.Regalona.r1.1BG0015990, CQ.Regalona.r1.1BG0016030, CQ.Regalona.r1.1BG0016040, CQ.Regalona.r1.6AG0007710, CQ.Regalona.r1.6AG0007720, CQ.Regalona.r1.6BG0008460, CQ.Regalona.r1.6BG0008480, CQ.Regalona.r1.6BG0008490
Anacardiaceae	Pistacia vera	5	pistato.v30042220, pistato.v30042230, pistato.v30042240 ... pistato.v30042260, pistato.v30204100
Apiaceae	Apium graveolens	7	Ag10G01590, Ag10G02839, Ag2G00481, Ag3G00081, Ag3G00082 ... Ag7G01526, AgUnG00445
Arecaceae	Cocos nucifera	1	COCNU_11G000950
Arecaceae	Phoenix dactylifera	3	gene-LOC103701115, gene-LOC103701173, gene-LOC103701175
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.1054.V1.1, AsparagusV1_07.2369.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G21469, Ftri10G23224, Ftri18G02530, Ftri18G33615 ... Ftri9G13859
Brassicaceae	Arabidopsis thaliana	8	AT1G09880.1, AT1G09890.1, AT1G09910.1, AT1G65210.1 ... AT2G22620.1, AT4G24430.1, AT4G37950.1, AT4G38030.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10000697m.g.v1.0, Thhalv10007038m.g.v1.0 ... Thhalv10007058m.g.v1.0, Thhalv10007093m.g.v1.0, Thhalv10024612m.g.v1.0, Thhalv10024647m.g.v1.0, Thhalv10027081m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g08510.v2.2, Sp1g08520.v2.2, Sp1g08540.v2.2 ... Sp4g01660.v2.2, Sp7g22390.v2.2, Sp7g35600.v2.2, Sp7g35670.v2.2
Brassicaceae	Brassica nigra	10	BniB02g019040.2N, BniB03g003610.2N, BniB03g014580.2N ... BniB03g014620.2N, BniB04g029770.2N, BniB04g029790.2N, BniB05g001110.2N, BniB05g007660.2N, BniB05g012780.2N, BniB06g054280.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq02G1302, Ceq03G1045, Ceq03G1046, Ceq03G1047, Ceq03G1048 ... Ceq06G0354, Ceq06G0355
Casuarinaceae	Casuarina glauca	6	Cgl02G1345, Cgl03G1128, Cgl03G1129, Cgl03G1131, Cgl06G0374 ... Cgl06G0375
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g15030, gene.Cymno11g03560
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g05370, gene.Thate06g01560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-10105, nbisL1-mrna-10126, nbisL1-mrna-2138 ... nbisL1-mrna-7166, nbisL1-mrna-8801
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.2667, evm.TU.LG05.1105, evm.TU.LG06.246 ... evm.TU.LG06.248, evm.TU.LG06.249
Plantaginaceae	Plantago ovata	13	Pov_00001949, Pov_00002385, Pov_00002388, Pov_00016025 ... Pov_00016582, Pov_00020575, Pov_00021112, Pov_00026354, Pov_00026356, Pov_00037167, Pov_00037169, Pov_00037802, Pov_00041447
Plumbaginaceae	Limonium bicolor	9	Lb1G06861, Lb1G08036, Lb4G22819, Lb4G22905, Lb4G22906 ... Lb4G23016, Lb4G25132, Lb5G27844, Lb7G34541
Poaceae	Echinochloa crus-galli	15	AH04.1361, AH04.158, AH04.159, AH08.2343, BH04.1364 ... BH05.123, BH05.1236, BH08.2488, CH01.2733, CH04.1542, CH04.197, CH04.198, CH05.1469, CH05.190, CH08.2680
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_5AG0380240, gene-QOZ80_5AG0380250 ... gene-QOZ80_5BG0427320, gene-QOZ80_5BG0427330, gene-QOZ80_7AG0553780, gene-QOZ80_7BG0584830, gene-QOZ80_8AG0639980, gene-QOZ80_8BG0668600, gene-QOZ80_9AG0673560, gene-QOZ80_9BG0697260, gene-QOZ80_9BG0708030
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.4HG0356390.1, HORVU.MOREX.r3.6HG0547930.1 ... HORVU.MOREX.r3.6HG0556810.1, HORVU.MOREX.r3.7HG0688310.1
Poaceae	Lolium multiflorum	5	gene-QYE76_030646, gene-QYE76_044923, gene-QYE76_045004 ... gene-QYE76_065177, gene-QYE76_065184
Poaceae	Oryza coarctata	4	Oco15G014350, Oco16G013620, Oco22G001220, Oco24G000580
Poaceae	Oryza sativa	2	LOC_Os08g44020.2, LOC_Os08g44040.1
Poaceae	Paspalum vaginatum	5	gene-BS78_05G031500, gene-BS78_05G148700 ... gene-BS78_07G223400, gene-BS78_08G008400, gene-BS78_08G008900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0403407, Pt_Chr0703505
Poaceae	Sporobolus alterniflorus	12	Chr04G021600, Chr06G023200, Chr10G014090, Chr11G008180 ... Chr16G006560, Chr16G006600, Chr16G018900, Chr17G006050, Chr17G017900, Chr20G003040, Chr24G002160, Chr29G000590
Poaceae	Thinopyrum elongatum	5	Tel4E01G204000, Tel6E01G147800, Tel6E01G240200 ... Tel6E01G240500, Tel7E01G478600
Poaceae	Triticum dicoccoides	10	gene_TRIDC4AG029910, gene_TRIDC4BG020650 ... gene_TRIDC6AG007330, gene_TRIDC6AG014080, gene_TRIDC6AG014120, gene_TRIDC6BG010550, gene_TRIDC6BG019570, gene_TRIDC6BG019600, gene_TRIDC7AG036200, gene_TRIDC7BG027440
Poaceae	Triticum aestivum	15	TraesCS4A02G187200.1, TraesCS4B02G130900.1 ... TraesCS4D02G126300.1, TraesCS6A02G055300.2, TraesCS6A02G108200.1, TraesCS6A02G108400.1, TraesCS6B02G078500.1, TraesCS6B02G136800.1, TraesCS6B02G136900.1, TraesCS6D02G096200.1, TraesCS6D02G096400.1, TraesCS7A02G276300.1, TraesCS7B02G174100.1, TraesCS7D02G276200.1, TraesCSU02G121100.1
Poaceae	Zea mays	5	Zm00001eb039820_P001, Zm00001eb170140_P001 ... Zm00001eb196040_P001, Zm00001eb235440_P006, Zm00001eb332110_P001
Poaceae	Zoysia japonica	8	nbis-gene-40117, nbis-gene-42846, nbis-gene-49565 ... nbis-gene-50257, nbis-gene-50417, nbis-gene-52924, nbis-gene-52925, nbis-gene-55287
Poaceae	Zoysia macrostachya	4	Zma_g18868, Zma_g23418, Zma_g30009, Zma_g5911
Portulacaceae	Portulaca oleracea	20	evm.TU.LG01.191, evm.TU.LG01.719, evm.TU.LG01.722 ... evm.TU.LG02.2019, evm.TU.LG02.2344, evm.TU.LG04.1621, evm.TU.LG04.55, evm.TU.LG04.561, evm.TU.LG04.57, evm.TU.LG07.57, evm.TU.LG07.980, evm.TU.LG07.982, evm.TU.LG10.1277, evm.TU.LG15.904, evm.TU.LG15.907, evm.TU.LG19.320, evm.TU.LG19.327, evm.TU.LG23.271, evm.TU.LG23.579, evm.TU.LG24.230
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g28070, gene.Posoc03g29170, gene.Posoc04g06850
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.29719.1, evm.TU.Scaffold_3_RagTag.1137 ... evm.TU.Scaffold_3_RagTag.1143, evm.TU.Scaffold_6_RagTag.1721, evm.TU.Scaffold_7_RagTag.895, evm.TU.Scaffold_7_RagTag.896
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-17433, nbisL1-mrna-17452, nbisL1-mrna-19362 ... nbisL1-mrna-833, nbisL1-mrna-838, nbisL1-mrna-9397
Rhizophoraceae	Ceriops tagal	12	nbisL1-mrna-11963, nbisL1-mrna-11964, nbisL1-mrna-12227 ... nbisL1-mrna-15048, nbisL1-mrna-17071, nbisL1-mrna-17944, nbisL1-mrna-18200, nbisL1-mrna-20205, nbisL1-mrna-428, nbisL1-mrna-5439, nbisL1-mrna-5780, nbisL1-mrna-5848
Rhizophoraceae	Ceriops zippeliana	12	nbisL1-mrna-12043, nbisL1-mrna-12044, nbisL1-mrna-12045 ... nbisL1-mrna-20571, nbisL1-mrna-20776, nbisL1-mrna-2389, nbisL1-mrna-2390, nbisL1-mrna-2391, nbisL1-mrna-2392, nbisL1-mrna-2395, nbisL1-mrna-6726, nbisL1-mrna-6728
Rhizophoraceae	Kandelia candel	9	evm.TU.utg000002l.689, evm.TU.utg000002l.690 ... evm.TU.utg000002l.691, evm.TU.utg000011l.1046, evm.TU.utg000011l.1047, evm.TU.utg000015l.34, evm.TU.utg000018l.233, evm.TU.utg000019l.558, evm.TU.utg000019l.559
Rhizophoraceae	Kandelia obovata	6	Maker00001868, Maker00001872, Maker00003269, Maker00008325 ... Maker00010325, Maker00010846
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-11489, nbisL1-mrna-11490, nbisL1-mrna-13071 ... nbisL1-mrna-13072, nbisL1-mrna-13073, nbisL1-mrna-15403, nbisL1-mrna-15404, nbisL1-mrna-6160
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-10142, nbisL1-mrna-10144, nbisL1-mrna-10145 ... nbisL1-mrna-17061, nbisL1-mrna-17062, nbisL1-mrna-1838, nbisL1-mrna-3365
Salicaceae	Populus euphratica	7	populus_peu12011, populus_peu12554, populus_peu14505 ... populus_peu32138, populus_peu32139, populus_peu32140, populus_peu32141
Solanaceae	Lycium barbarum	14	gene-LOC132604024, gene-LOC132614352, gene-LOC132614671 ... gene-LOC132614897, gene-LOC132615317, gene-LOC132615346, gene-LOC132615358, gene-LOC132615495, gene-LOC132616100, gene-LOC132627654, gene-LOC132627656, gene-LOC132627657, gene-LOC132627658, gene-LOC132640553
Solanaceae	Solanum chilense	8	SOLCI000708300, SOLCI000708400, SOLCI002702300 ... SOLCI003168000, SOLCI005936700, SOLCI005936800, SOLCI006277700, SOLCI006288700
Solanaceae	Solanum pennellii	15	gene-LOC107003447, gene-LOC107003577, gene-LOC107003578 ... gene-LOC107003579, gene-LOC107004102, gene-LOC107006009, gene-LOC107015977, gene-LOC107015978, gene-LOC107016105, gene-LOC107016450, gene-LOC107017775, gene-LOC107017776, gene-LOC107019910, gene-LOC107029989, gene-LOC114073921
Tamaricaceae	Reaumuria soongarica	5	STRG.15505_chr06_+, gene_15329, gene_15869, gene_9279 ... gene_9667
Tamaricaceae	Tamarix chinensis	6	TC01G2007, TC01G2010, TC02G0111, TC02G0736, TC04G1989 ... TC05G0211