Basic Information
Locus ID:
TC01G1901
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 75444702 | 75446156 | + | TC01G1901 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 51,766.28 Da | 37.84 | 93.88 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 119 | 196 | 1.6E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 281 | 410 | 1.8E-10 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 279 | 410 | 6.93E-15 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 114 | 256 | 3.66E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 273 | 411 | 4.0E-8 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 107 | 258 | 2.5E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 144 | 259 | 1.1 | IPR000782 |
| SMART | SM00554 | fasc_3 | 307 | 411 | 6.0E-10 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 108 | 256 | 11.966068 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 454 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_002534396.3 | fasciclin-like arabinogalactan protein 2 [Ricinus communis] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A1R3 | Gamma-glutamyltransferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology