Basic Information
Locus ID:
TC01G1663
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 67847890 | 67850478 | + | TC01G1663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 39,540.00 Da | 51.15 | 57.61 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 281 | 339 | 2.3E-25 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 98 | 179 | 1.3E-18 | IPR008913 |
| Pfam | PF14634 | zinc-RING finger domain | 234 | 278 | 6.2E-8 | IPR001841 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 95 | 169 | 4.84E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 170 | 227 | 2.62E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 233 | 283 | 1.24E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 279 | 3.2E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 305 | 343 | 8.2E-19 | - |
| SMART | SM00184 | ring_2 | 234 | 276 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 169 | 233 | 34.464291 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 91 | 167 | 24.821646 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 234 | 277 | 11.648357 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021862719.1 | probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Spinacia oleracea] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7ARH3 | Putative RING finger and CHY zinc finger domain-containing protein 1 OS=Davidia involucrata OX=16924 GN=Din_028650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology