Basic Information
Locus ID:
TC01G1651
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 67541156 | 67545370 | + | TC01G1651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 44,938.66 Da | 40.80 | 89.30 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 356 | 398 | 2.30081E-18 | - |
| Pfam | PF13639 | Ring finger domain | 356 | 398 | 4.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 347 | 403 | 1.24E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 297 | 403 | 3.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 357 | 397 | 6.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 357 | 398 | 12.489278 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010670760.1 | E3 ubiquitin-protein ligase At1g63170 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9ELQ1 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23820, jg36772, jg4518, jg7847 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10685, gene_26161 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah010680, Ah014472, Ah030575, Ah031909 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g043630, BVRB_8g195660, BVRB_9g220400 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg11484, Sbi_jg24899, Sbi_jg30296, Sbi_jg43713 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg18195, Seu_jg19847, Seu_jg20735 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00005255, GOSA_00007870, GOSA_00025552 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl42142, Sgl46909, Sgl55872, Sgl61063, Sgl65784, Sgl65799 ... |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000012100, gene:ENSEOMG00000013069 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.2AG0001740, CQ.Regalona.r1.2BG0002770 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30126890, pistato.v30253030 |
| Apiaceae | Apium graveolens | 2 | Ag6G02480, Ag8G00180 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G000200, COCNU_03G016280, COCNU_06G000700 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103720847, gene-LOC103720959, gene-LOC120105939 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2010.V1.1, AsparagusV1_06.956.V1.1 |
| Asteraceae | Flaveria trinervia | 6 | Ftri13G18241, Ftri15G17983, Ftri2G25785, Ftri4G05524 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G80400.1, AT4G32600.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018651m.g.v1.0, Thhalv10025242m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g35410.v2.2, Sp7g30370.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g009880.2N, BniB05g005480.2N, BniB05g075830.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0233, Ceq04G2264 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0253, Cgl04G2462 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g11760 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g15130 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3761, nbisL1-mrna-4526 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.386, evm.TU.LG07.1386 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036164 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G12576, Lb5G29282, Lb6G32508 |
| Poaceae | Echinochloa crus-galli | 10 | AH01.1090, AH02.435, AH07.3731, BH01.1605, BH02.452 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0012010, gene-QOZ80_1AG0047440 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0027180.1, HORVU.MOREX.r3.3HG0239660.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_009737, gene-QYE76_010023, gene-QYE76_026123 ... |
| Poaceae | Oryza coarctata | 6 | Oco01G003300, Oco02G003330, Oco03G023790, Oco04G024330 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g08340.1, LOC_Os02g54624.1, LOC_Os05g08610.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_03G041800, gene-BS78_03G044400 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0200192, Pt_Chr0200269, Pt_Chr0202974, Pt_Chr0501628 ... |
| Poaceae | Sporobolus alterniflorus | 13 | Chr01G011520, Chr02G000590, Chr02G020170, Chr03G005650 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G219100, Tel3E01G206700, Tel6E01G616100 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG013590, gene_TRIDC1BG020800 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G118800.2, TraesCS1B02G138300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb122400_P001, Zm00001eb257360_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13201 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11984, Zma_g26533, Zma_g7726, Zma_g9411 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG02.2135, evm.TU.LG02.2930, evm.TU.LG03.2540 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g15260, gene.Posoc09g11680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1249 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13677, nbisL1-mrna-6963 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11900, nbisL1-mrna-17447 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16996, nbisL1-mrna-9055 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.375 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003883, Maker00004090 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16377 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18027, nbisL1-mrna-7909 |
| Salicaceae | Populus euphratica | 2 | populus_peu04835, populus_peu12823 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132609076, gene-LOC132635713, gene-LOC132636769 |
| Solanaceae | Solanum chilense | 2 | SOLCI004490400, SOLCI005195100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007480, gene-LOC107028941 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.32876_chr09_-, STRG.3870_chr02_-, STRG.5599_chr03_- |
| Tamaricaceae | Tamarix chinensis | 5 | TC01G1651, TC02G0431, TC10G1591, TC10G1941, TC12G1257 |
| Zosteraceae | Zostera marina | 3 | Zosma01g08450.v3.1, Zosma04g07070.v3.1, Zosma05g07290.v3.1 |