Basic Information
Locus ID:
TC01G1361
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 56840107 | 56845889 | + | TC01G1361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 56,728.92 Da | 56.63 | 79.78 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00570 | HRDC domain | 325 | 393 | 2.3E-14 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 21 | 71 | 2.9E-9 | IPR001650 |
| Pfam | PF09382 | RQC domain | 171 | 287 | 1.4E-23 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 84 | 164 | 1.7E-14 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 318 | 401 | 6.11E-15 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 16 | 215 | 2.59E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 15 | 168 | 1.1E-40 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 317 | 406 | 2.6E-23 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 172 | 282 | 1.9E-20 | IPR036388 |
| SMART | SM00490 | helicmild6 | 6 | 72 | 3.7E-10 | IPR001650 |
| SMART | SM00341 | hrdc7 | 321 | 403 | 5.1E-5 | IPR002121 |
| SMART | SM00956 | RQC_2 | 174 | 285 | 6.4E-27 | IPR018982 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 321 | 403 | 19.009712 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 127 | 12.067482 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 317 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021624717.1 | ATP-dependent DNA helicase Q-like 4A isoform X2 [Manihot esculenta] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A438GVS4 | ATP-dependent DNA helicase OS=Vitis vinifera OX=29760 GN=RECQL4A_2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology