Basic Information
Locus ID:
TC01G1143
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 45763293 | 45788107 | - | TC01G1143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 131,380.20 Da | 42.70 | 78.97 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 57 | 173 | 1.52669E-35 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 198 | 526 | 4.80758E-165 | - |
| Pfam | PF00917 | MATH domain | 62 | 181 | 4.7E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 200 | 521 | 2.4E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 887 | 1098 | 5.7E-56 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 625 | 877 | 2.0E-77 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 54 | 189 | 4.09E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 195 | 552 | 5.69E-98 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 685 | 802 | 9.3E-44 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 197 | 525 | 8.9E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 803 | 900 | 6.4E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 53 | 196 | 2.3E-51 | IPR008974 |
| SMART | SM00061 | math_3 | 57 | 161 | 1.7E-18 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 55 | 180 | 38.80098 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 200 | 524 | 40.932983 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 201 | 216 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 440 | 457 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| Coils | Coil | Coil | 533 | 564 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021720606.1 | ubiquitin carboxyl-terminal hydrolase 12 [Chenopodium quinoa] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | V4SJQ8 | ubiquitinyl hydrolase 1 OS=Citrus clementina OX=85681 GN=CICLE_v10027709mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology