Basic Information
Locus ID:
TC01G0647
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 21926845 | 21927945 | + | TC01G0647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 40,386.99 Da | 51.55 | 64.73 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 318 | 355 | 1.59827E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 316 | 359 | 2.9E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 362 | 3.3E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 292 | 366 | 3.6E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 318 | 355 | 7.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 356 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 309 | - | - |
| Coils | Coil | Coil | 201 | 221 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_010685024.2 | E3 ubiquitin-protein ligase RNF34 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9R914 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology