Basic Information
Locus ID:
TC01G0621
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 20716549 | 20725675 | + | TC01G0621 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 86,834.98 Da | 54.33 | 67.29 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 514 | 790 | 1.29739E-54 | - |
| Pfam | PF08513 | LisH | 3 | 26 | 1.1E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 551 | 584 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 510 | 542 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 754 | 790 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 510 | 790 | 1.05E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 488 | 640 | 2.6E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 641 | 790 | 1.7E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 504 | 542 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 584 | 2.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 628 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 711 | 750 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 752 | 790 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 670 | 708 | 4.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 759 | 790 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 552 | 584 | 11.444681 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 552 | 584 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 3 | 31 | 8.743191 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 759 | 790 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 510 | 551 | 10.374778 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 529 | 543 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 374 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106448.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R1F4 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology