Basic Information
Locus ID:
TC01G0537
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 17598563 | 17611521 | + | TC01G0537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 171,240.83 Da | 42.37 | 106.57 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 976 | 1270 | 2.38428E-94 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1293 | 1513 | 1.28417E-124 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 652 | 852 | 8.74864E-103 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 339 | 626 | 7.42317E-104 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 670 | 804 | 5.0E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1312 | 1460 | 6.0E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 342 | 606 | 2.7E-29 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 978 | 1220 | 4.6E-27 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 975 | 1277 | 1.44E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 648 | 872 | 2.93E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1285 | 1520 | 1.28E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 329 | 634 | 7.98E-39 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1279 | 1530 | 1.2E-81 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 650 | 882 | 8.0E-69 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 937 | 1275 | 1.1E-60 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 309 | 635 | 4.1E-55 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1321 | 1506 | 6.8E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 679 | 860 | 6.2E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 978 | 1248 | 36.288219 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1295 | 1529 | 17.827263 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 652 | 875 | 22.295694 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 341 | 618 | 38.413986 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 777 | 791 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 928 | 952 | - | - |
| Coils | Coil | Coil | 930 | 954 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021848338.1 | ABC transporter C family member 5-like [Spinacia oleracea] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M957 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology