Basic Information
Locus ID:
TC01G0524
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 17095508 | 17117967 | - | TC01G0524 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 63,402.87 Da | 51.64 | 87.84 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 275 | 4.9E-4 | IPR001680 |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 362 | 448 | 1.6E-4 | IPR013979 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 234 | 564 | 8.9E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 230 | 566 | 2.3E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 2.4E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 73 | 130 | 2.9E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 486 | 524 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 442 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 484 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 398 | 2.7E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 276 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 40 | 72 | 8.414122 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 276 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 407 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 73 | 130 | 10.557583 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 366 | 402 | 11.444681 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021763349.1 | WD repeat-containing protein 26-like [Chenopodium quinoa] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LAD9 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology