Basic Information
Locus ID:
TC01G0394
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12026005 | 12026757 | - | TC01G0394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 27,668.88 Da | 57.74 | 74.44 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 105 | 148 | 1.77613E-18 | - |
| Pfam | PF13639 | Ring finger domain | 105 | 148 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 152 | 1.06E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 154 | 1.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 106 | 147 | 2.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 106 | 148 | 13.035139 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 250 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_012083978.1 | RING-H2 finger protein ATL2 [Jatropha curcas] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067JV40 | RING-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_18911 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology