Basic Information
Locus ID:
TC01G0002
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 91327 | 92700 | + | TC01G0002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.35 | 50,727.98 Da | 62.52 | 71.12 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 175 | 220 | 5.49911E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 176 | 222 | 2.5E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 231 | 2.65E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 266 | 3.9E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 177 | 218 | 9.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 219 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 457 | - | - |
| Coils | Coil | Coil | 47 | 74 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_028111173.1 | uncharacterized protein LOC114309595 [Camellia sinensis] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R6RCZ9 | RING-type E3 ubiquitin transferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07737 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg1657, jg26710, jg29802, jg31283, jg33299, jg4417 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19109 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021464 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g060020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59178, Sbi_jg63460 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23441 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012751 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02589, Sgl07745 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013640, gene:ENSEOMG00000032614 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019490, CQ.Regalona.r1.3BG0020230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30231120 |
| Apiaceae | Apium graveolens | 3 | Ag10G00394, Ag1G00337, Ag2G01452 |
| Asteraceae | Flaveria trinervia | 5 | Ftri11G05808, Ftri12G05104, Ftri12G25492, Ftri15G02173 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G42030.1, AT2G44410.1, AT3G58030.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001730m.g.v1.0, Thhalv10005986m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g24260.v2.2, Sp4g26480.v2.2, Sp5g04690.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g002050.2N, BniB06g001230.2N, BniB06g055280.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1336 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8718 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1658, evm.TU.LG03.11 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006870, Pov_00016869 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G29056 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2074, evm.TU.LG15.1063 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60400.14, evm.TU.Scaffold_1_RagTag.1254 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-4061, nbisL1-mrna-6358, nbisL1-mrna-6362 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13282, nbisL1-mrna-8130 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-22218, nbisL1-mrna-4187 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000009l.200, add.evm.TU.utg000016l.141 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003074, Maker00004989 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19769, nbisL1-mrna-21781 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13442, nbisL1-mrna-5625 |
| Salicaceae | Populus euphratica | 4 | populus_peu02215, populus_peu12316, populus_peu26073 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132607526, gene-LOC132611383, gene-LOC132644427 |
| Solanaceae | Solanum chilense | 2 | SOLCI003356500, SOLCI007366700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008319, gene-LOC107021636, gene-LOC107031830 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1979_chr01_+, STRG.21819_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0002, TC05G2003, TC06G1576 |