Basic Information
Locus ID:
SpUn1114_0010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| un1114 | 348 | 845 | + | SpUn1114_0010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 18,060.06 Da | 59.67 | 96.85 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 105 | 148 | 5.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 157 | 4.54E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 154 | 8.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 106 | 147 | 5.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 106 | 148 | 11.795887 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009106518.1 | E3 ubiquitin-protein ligase ATL23 [Brassica rapa] | 0 |
| Q8L9W3 | E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3P6AEQ2 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA02T07721Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology