Basic Information
Locus ID:
SpUn0748_0010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| un0748 | 892 | 2639 | - | SpUn0748_0010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 24,894.10 Da | 36.50 | 78.92 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 148 | 183 | 1.87891E-8 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 148 | 186 | 1.4E-7 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 2 | 65 | 1.5E-8 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 1 | 73 | 1.57E-18 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 131 | 187 | 8.9E-12 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 123 | 194 | 1.8E-10 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 1 | 83 | 5.4E-16 | IPR036431 |
| SMART | SM00501 | bright_3 | 1 | 70 | 1.2E-9 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 1 | 69 | 18.222168 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 148 | 186 | 10.047483 | IPR009071 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006392614.1 | high mobility group B protein 10 [Eutrema salsugineum] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | V4JWQ7 | High mobility group B protein 10 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011675mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology