Basic Information
Locus ID:
SpUn0392_0010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| un0392 | 51 | 1103 | - | SpUn0392_0010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 36,598.41 Da | 47.15 | 78.83 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 153 | 247 | 3.7E-9 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 31 | 125 | 1.1E-13 | IPR002902 |
| Gene3D | G3DSA:3.30.430.20 | - | 19 | 127 | 5.3E-17 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 140 | 248 | 4.4E-15 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 19 | 128 | 14.587909 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 134 | 249 | 14.189617 | IPR002902 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04540.3 | - | 0 |
| RefSeq | XP_018455936.1 | PREDICTED: putative cysteine-rich receptor-like protein kinase 39 [Raphanus sativus] | 0 |
| Q9SYS7 | Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana OX=3702 GN=CRK39 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1J3GLR5 | Putative cysteine-rich receptor-like protein kinase 39 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR5429_c7_g1_i1_g.19916 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G04500.1, AT4G04540.1, AT4G04570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028430m.g.v1.0, Thhalv10028504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g04360.v2.2, Sp6g04390.v2.2, SpUn0392_0010.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB04g010550.2N, BniB05g056170.2N, BniB08g026560.2N ... |