Basic Information
Locus ID:
SpUn0331_0010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| un0331 | 2804 | 4087 | + | SpUn0331_0010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 47,877.34 Da | 45.48 | 99.72 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 37 | 78 | 1.44581E-24 | - |
| Pfam | PF04564 | U-box domain | 33 | 103 | 2.0E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 104 | 3.14E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 123 | 388 | 1.11E-10 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 109 | 415 | 9.1E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 108 | 3.7E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 36 | 99 | 9.1E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 32 | 106 | 42.275368 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66160.1 | CYS, MET, PRO, and GLY protein 1. | 0 |
| RefSeq | XP_006391350.1 | U-box domain-containing protein 20 [Eutrema salsugineum] | 0 |
| Q9C8D1 | U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AWF9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024154 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology