halophFGD

Basic Information

Locus ID: SpUn0316_0020.v2.2

Species & Taxonomic ID: Schrenkiella parvula & 98039

Genome Assembly: v2.2

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
un0316	1	3023	-	SpUn0316_0020.v2.2

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.13	83,812.25 Da	29.23	93.05	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	9	317	2.91548E-77	-
Pfam	PF00400	WD domain, G-beta repeat	45	79	4.6E-5	IPR001680
Pfam	PF12894	Anaphase-promoting complex subunit 4 WD40 domain	211	291	3.8E-5	IPR024977
Pfam	PF00400	WD domain, G-beta repeat	126	163	7.6E-8	IPR001680
Pfam	PF04053	Coatomer WD associated region	340	736	5.1E-119	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	84	121	2.7E-8	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	4	315	3.4E-76	IPR036322
SUPERFAMILY	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	236	548	2.88E-16	IPR011048
Gene3D	G3DSA:1.25.40.470	-	640	736	4.7E-40	-
Gene3D	G3DSA:2.130.10.10	-	1	319	5.5E-128	IPR015943
SMART	SM00320	WD40_4	193	232	6.1E-6	IPR001680
SMART	SM00320	WD40_4	279	317	47.0	IPR001680
SMART	SM00320	WD40_4	2	37	11.0	IPR001680
SMART	SM00320	WD40_4	237	276	2.7E-6	IPR001680
SMART	SM00320	WD40_4	82	121	3.1E-9	IPR001680
SMART	SM00320	WD40_4	124	163	5.8E-11	IPR001680
SMART	SM00320	WD40_4	40	79	8.0E-7	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	131	164	12.657402	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	5	46	8.703868	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	89	130	13.582925	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	47	82	10.627413	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	200	234	10.601049	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	244	285	15.922199	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	89	121	10.759232	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	47	88	13.649761	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	244	276	12.26195	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	200	241	13.014815	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	131	164	15.35409	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	150	164	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	263	277	9.5E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	150	164	9.5E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	108	122	9.5E-8	IPR020472

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat)

KEGG Pathway

KO Term:

K05236 (coatomer subunit alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62020.1	Coatomer, alpha subunit.
RefSeq	XP_002888041.1	coatomer subunit alpha-1 [Arabidopsis lyrata subsp. lyrata]
Swiss-Prot	Q94A40	Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2
TrEMBL	D7KUU6	Coatomer subunit alpha OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_475134 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg11823, jg22921, jg6331
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21686, gene_23066
Amaranthaceae	Atriplex hortensis	2	Ah010166, Ah023494
Amaranthaceae	Beta vulgaris	2	BVRB_1g006300, BVRB_9g216820
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12377, Sbi_jg28837, Sbi_jg3100, Sbi_jg45965
Amaranthaceae	Salicornia europaea	2	Seu_jg20296, Seu_jg6800
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000002, GOSA_00005641, GOSA_00022497
Amaranthaceae	Suaeda glauca	4	Sgl11621, Sgl17119, Sgl56148, Sgl60851
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000013151, gene:ENSEOMG00000018082 ... gene:ENSEOMG00000035845, gene:ENSEOMG00000048140, gene:ENSEOMG00000049535
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0009120, CQ.Regalona.r1.1BG0016730 ... CQ.Regalona.r1.7BG0007040, CQ.Regalona.r1.9AG0017560
Anacardiaceae	Pistacia vera	2	pistato.v30047210, pistato.v30115410
Apiaceae	Apium graveolens	3	Ag1G00944, Ag4G02289, Ag9G00871
Arecaceae	Cocos nucifera	4	COCNU_07G005410, COCNU_10G003700, COCNU_10G003710 ... COCNU_16G003990
Arecaceae	Phoenix dactylifera	4	gene-LOC103707916, gene-LOC103711684, gene-LOC103711687 ... gene-LOC103716534
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1564.V1.1, AsparagusV1_03.1565.V1.1 ... AsparagusV1_03.297.V1.1, AsparagusV1_03.298.V1.1, AsparagusV1_07.3590.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G00265, Ftri9G15036, Ftri9G25855
Brassicaceae	Arabidopsis thaliana	2	AT1G62020.1, AT2G21390.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000016m.g.v1.0, Thhalv10024239m.g.v1.0 ... Thhalv10024240m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp7g36760.v2.2, SpUn0316_0020.v2.2, SpUn0316_0030.v2.2
Brassicaceae	Brassica nigra	5	BniB02g017130.2N, BniB02g051810.2N, BniB02g089160.2N ... BniB03g015090.2N, BniB05g000410.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0943, Ceq07G1531
Casuarinaceae	Casuarina glauca	1	Cgl07G1629
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g04040, gene.Cymno18g03810
Dunaliellaceae	Dunaliella salina	3	Dusal.1106s00001.v1.0, Dusal.1106s00002.v1.0 ... Dusal.1106s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g04720, gene.Thate07g02870
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG08.198, evm.TU.LG08.200
Plantaginaceae	Plantago ovata	3	Pov_00002523, Pov_00028976, Pov_00032513
Plumbaginaceae	Limonium bicolor	5	Lb3G17297, Lb3G17302, Lb3G17306, Lb4G25861, Lb4G25871
Poaceae	Echinochloa crus-galli	8	AH01.852, AH02.290, BH01.996, BH02.309, BH02.313, CH01.1040 ... CH02.341, CH02.344
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219120, gene-QOZ80_3AG0232670 ... gene-QOZ80_3BG0264450, gene-QOZ80_3BG0295300
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0337110.1, HORVU.MOREX.r3.4HG0416190.1
Poaceae	Lolium multiflorum	2	gene-QYE76_062439, gene-QYE76_062878
Poaceae	Oryza coarctata	5	Oco05G021610, Oco05G021620, Oco06G022410, Oco09G003640 ... Oco17G000570
Poaceae	Oryza sativa	3	LOC_Os03g50340.1, LOC_Os03g50350.1, LOC_Os09g04110.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G107100, gene-BS78_04G305200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0101032, Pt_Chr0101145, Pt_Chr0105043
Poaceae	Sporobolus alterniflorus	10	Chr01G007080, Chr01G007120, Chr04G005190, Chr04G026930 ... Chr04G026940, Chr06G030160, Chr06G032340, Chr07G025920, Chr09G002000, Chr12G030370
Poaceae	Thinopyrum elongatum	2	Tel4E01G082500, Tel4E01G606600
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG041810, gene_TRIDC4BG007220 ... gene_TRIDC4BG062010, gene_TRIDC5AG076630
Poaceae	Triticum aestivum	6	TraesCS4A02G268100.1, TraesCS4B02G046300.1 ... TraesCS4B02G373400.1, TraesCS4D02G045800.1, TraesCS4D02G363900.2, TraesCS5A02G540800.1
Poaceae	Zea mays	3	Zm00001eb054910_P001, Zm00001eb120410_P002 ... Zm00001eb216390_P001
Poaceae	Zoysia japonica	3	nbis-gene-1014, nbis-gene-14818, nbis-gene-15917
Poaceae	Zoysia macrostachya	3	Zma_g2957, Zma_g6445, Zma_g648
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.319, evm.TU.LG08.1772, evm.TU.LG09.1603 ... evm.TU.LG19.583, evm.TU.LG22.723, evm.TU.LG24.47
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g18990, gene.Posoc07g04700, gene.Posoc09g02360
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.2232, evm.TU.Scaffold_2_RagTag.172 ... evm.TU.Scaffold_8_RagTag.1274
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-5035
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11826, nbisL1-mrna-14291, nbisL1-mrna-9935
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15371, nbisL1-mrna-3317, nbisL1-mrna-9423
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.1129, evm.TU.utg000016l.127 ... evm.TU.utg000018l.414
Rhizophoraceae	Kandelia obovata	3	Maker00003675, Maker00005137, Maker00016473
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13348, nbisL1-mrna-14177
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11130, nbisL1-mrna-14153, nbisL1-mrna-21077
Salicaceae	Populus euphratica	4	populus_peu28573, populus_peu29997, populus_peu30017 ... populus_peu30018
Solanaceae	Lycium barbarum	2	gene-LOC132617058, gene-LOC132628078
Solanaceae	Solanum chilense	1	SOLCI001135400
Solanaceae	Solanum pennellii	2	gene-LOC107017620, gene-LOC107025827
Tamaricaceae	Reaumuria soongarica	3	STRG.18510_chr09_-, gene_15460, gene_7841
Tamaricaceae	Tamarix chinensis	4	TC09G0602, TC10G0426, TC12G0987, TC12G0989
Zosteraceae	Zostera marina	2	Zosma01g07520.v3.1, Zosma05g00460.v3.1