Basic Information
Locus ID:
SpUn0123_0010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| un0123 | 6373 | 7335 | + | SpUn0123_0010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 36,431.94 Da | 80.22 | 68.91 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 216 | 258 | 2.4E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 19 | 51 | 4.2E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 264 | 2.08E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 264 | 5.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 217 | 257 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 217 | 258 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 122 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006414828.2 | E3 ubiquitin-protein ligase RING1-like [Eutrema salsugineum] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | V4P9E2 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025714mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology