Basic Information
Locus ID:
SpUn0058_0010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| un0058 | 7130 | 8373 | - | SpUn0058_0010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 39,256.40 Da | 50.69 | 92.54 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 54 | 2.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 72 | 2.35E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 102 | 5.5E-7 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 1.6E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 54 | 11.431561 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71320.1 | F-box family protein. | 0 |
| RefSeq | XP_020882229.1 | putative F-box protein At1g71320 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9FVV8 | Putative F-box protein At1g71320 OS=Arabidopsis thaliana OX=3702 GN=At1g71320 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8T2BS96 | F-box domain OS=Arabidopsis suecica OX=45249 GN=ISN44_As07g019940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G33530.1, AT1G71320.1, AT3G62350.1, AT3G62380.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009802m.g.v1.0, Thhalv10009811m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp1g28940.v2.2, Sp1g29020.v2.2, Sp1g33930.v2.2 ... |
| Brassicaceae | Brassica nigra | 2 | BniB05g024070.2N, BniB08g066240.2N |