Basic Information
Locus ID:
SpUn0004_0260.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zn-finger in Ran binding protein and others
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| un0004 | 164563 | 168571 | + | SpUn0004_0260.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 94,684.62 Da | 58.66 | 50.31 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 407 | 434 | 1.6E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 373 | 401 | 3.3E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 366 | 402 | 2.55E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 365 | 403 | 6.4E-17 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 404 | 435 | 6.0E-8 | - |
| SMART | SM00547 | zf_4 | 375 | 399 | 2.1E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 408 | 432 | 0.06 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 406 | 435 | 9.325869 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 373 | 402 | 10.116323 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 377 | 396 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 410 | 429 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 683 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_020868276.1 | uncharacterized protein LOC9330684 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A565AYR2 | Zinc finger protein VAR3, chloroplastic OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS4439 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology