Basic Information
Locus ID:
SpUn0002_0090.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| un0002 | 27387 | 32836 | - | SpUn0002_0090.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 69,296.15 Da | 39.20 | 82.14 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00311 | Phosphoenolpyruvate carboxylase | 515 | 600 | 9.6E-15 | IPR021135 |
| SUPERFAMILY | SSF51621 | Phosphoenolpyruvate/pyruvate domain | 399 | 600 | 3.61E-18 | IPR015813 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 267 | 358 | 9.08E-5 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 227 | 364 | 2.4E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 76 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42600.1 | phosphoenolpyruvate carboxylase 2. Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. | 0 |
| RefSeq | XP_033148407.1 | phosphoenolpyruvate carboxylase 2 isoform X2 [Brassica rapa] | 0 |
| Q5GM68 | Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PPC2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D2ZVZ6 | Phosphoenolpyruvate carboxylase OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 123 | Sp1g29790.v2.2, Sp1g29840.v2.2, Sp1g29850.v2.2 ... |