Basic Information
Locus ID:
Sp7g37170.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-6 | 1734704 | 1742632 | + | Sp7g37170.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 204,045.56 Da | 48.63 | 84.72 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1484 | 1897 | 1.41629E-123 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1531 | 1902 | 2.3E-81 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1476 | 1895 | 2.75E-93 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 202 | 662 | 6.84E-42 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1774 | 1900 | 3.8E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1424 | 1665 | 3.5E-44 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 192 | 510 | 4.2E-52 | IPR011989 |
| SMART | SM00119 | hect_3 | 1495 | 1902 | 1.1E-87 | IPR000569 |
| SMART | SM00185 | arm_5 | 360 | 398 | 9.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 234 | 275 | 44.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 317 | 357 | 61.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1508 | 1902 | 55.715321 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1291 | 1316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1086 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 979 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1042 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 994 | 1024 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_006411652.1 | E3 ubiquitin-protein ligase UPL3 [Eutrema salsugineum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | V4LRA0 | HECT-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024192mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology