Basic Information
Locus ID:
Sp7g36910.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-6 | 1648956 | 1651498 | - | Sp7g36910.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 35,122.24 Da | 54.64 | 68.64 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 1.4E-78 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 5 | 107 | 3.5E-44 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 2.3E-33 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 307 | - | - |
| Coils | Coil | Coil | 284 | 311 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38930.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | NP_974709.1 | Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T1YEE4 | Ubiquitin fusion degradation protein Ufd1-like OS=Arabidopsis suecica OX=45249 GN=ISN44_As12g000800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology