Basic Information
Locus ID:
Sp7g36810.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-6 | 1613219 | 1615483 | - | Sp7g36810.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 42,004.94 Da | 44.45 | 77.94 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 311 | 359 | 1.2E-9 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 49 | 260 | 1.09E-22 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 306 | 363 | 1.97E-14 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 294 | 369 | 3.4E-15 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 47 | 275 | 2.6E-11 | IPR027267 |
| SMART | SM00326 | SH3_2 | 307 | 362 | 5.8E-12 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 304 | 363 | 18.845411 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 329 | 345 | 3.1E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 345 | 358 | 3.1E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 309 | 329 | 3.1E-5 | - |
| Coils | Coil | Coil | 193 | 213 | - | - |
| Coils | Coil | Coil | 149 | 172 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 244 | 264 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_002866827.1 | SH3 domain-containing protein 2 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A565C7M1 | SH3 domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS20103 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology