Basic Information
Locus ID:
Sp7g36760.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-6 | 1585527 | 1590490 | - | Sp7g36760.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 142,072.66 Da | 36.52 | 92.19 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 61 | 369 | 2.88613E-76 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 263 | 343 | 1.3E-4 | IPR024977 |
| Pfam | PF04053 | Coatomer WD associated region | 398 | 820 | 6.9E-130 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 173 | 3.7E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 97 | 131 | 7.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 178 | 215 | 1.5E-7 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 867 | 1268 | 7.7E-167 | IPR010714 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 288 | 600 | 1.23E-16 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 49 | 367 | 3.66E-75 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 692 | 864 | 1.0E-61 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 51 | 371 | 2.6E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 176 | 215 | 5.7E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 173 | 1.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 5.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 369 | 77.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 245 | 284 | 9.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 131 | 7.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 1.8 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 51 | 1264 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 141 | 182 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 99 | 134 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 328 | 12.156496 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 183 | 216 | 12.683765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 252 | 293 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 252 | 286 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 183 | 216 | 15.387508 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 140 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 337 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 141 | 173 | 10.759232 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 202 | 216 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 160 | 174 | 4.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 4.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 315 | 329 | 4.3E-7 | IPR020472 |
| Coils | Coil | Coil | 1182 | 1202 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_006411704.1 | coatomer subunit alpha-1 [Eutrema salsugineum] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | V4MD98 | Coatomer subunit alpha OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024240mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology