Basic Information
Locus ID:
Sp7g36730.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-6 | 1574403 | 1576060 | + | Sp7g36730.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 26,208.10 Da | 58.74 | 50.92 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 141 | 189 | 5.4E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 22 | 136 | 1.1E-22 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 131 | 192 | 1.11E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 206 | 2.9E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 133 | 6.9E-29 | IPR043151 |
| SMART | SM00249 | PHD_3 | 141 | 188 | 8.9E-9 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 1.0E-39 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 190 | 9.3832 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 23.695965 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 187 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 222 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39100.1 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. Putative transcription factor containing a PHD finger and BAH motif, required for normal development | 0 |
| RefSeq | XP_006411708.1 | chromatin remodeling protein SHL [Eutrema salsugineum] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3ED97 | Histone lysine demethylase PHF8 OS=Noccaea caerulescens OX=107243 GN=GA_TR16855_c0_g1_i1_g.54072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology