Basic Information
Locus ID:
Sp7g34510.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-6 | 689098 | 693457 | - | Sp7g34510.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 63,979.17 Da | 68.62 | 70.72 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 193 | 245 | 1.06165E-27 | - |
| Pfam | PF00412 | LIM domain | 193 | 248 | 9.8E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 342 | 555 | 3.6E-104 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 186 | 218 | 3.52E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 186 | 251 | 8.3E-13 | - |
| SMART | SM00726 | uim | 152 | 171 | 0.12 | IPR003903 |
| SMART | SM00726 | uim | 42 | 61 | 2.1 | IPR003903 |
| SMART | SM00132 | lim_4 | 192 | 244 | 1.5E-11 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 42 | 61 | 8.662196 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 152 | 171 | 9.488556 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 191 | 251 | 11.3455 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 193 | 227 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 95 | - | - |
| Coils | Coil | Coil | 86 | 164 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_002866988.1 | protein DA1-related 1 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A565C8X3 | LIM zinc-binding domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS20443 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology