Basic Information
Locus ID:
Sp7g30620.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
poly(a) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-5 | 1927410 | 1932808 | + | Sp7g30620.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 86,308.44 Da | 51.12 | 73.33 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 61 | 216 | 2.61283E-29 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 369 | 427 | 6.0E-11 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 428 | 502 | 2.0E-5 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 95 | 170 | 3.4E-8 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 22 | 366 | 1.5E-108 | IPR007012 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 368 | 494 | 1.9E-36 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 18 | 215 | 6.54E-54 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 217 | 365 | 2.62E-64 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 54 | 210 | 1.1E-156 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 22 | 364 | 1.1E-156 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 368 | 484 | 2.1E-25 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 694 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.1 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_006412422.1 | nuclear poly(A) polymerase 4 isoform X2 [Eutrema salsugineum] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | V4LTD2 | polynucleotide adenylyltransferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024486mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology