Basic Information
Locus ID:
Sp7g26230.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-5 | 132045 | 133906 | - | Sp7g26230.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.44 | 22,497.44 Da | 69.29 | 69.49 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 20 | 76 | 1.84585E-24 | - |
| Pfam | PF13445 | RING-type zinc-finger | 22 | 72 | 8.0E-10 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 18 | 80 | 3.98E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 88 | 1.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 22 | 74 | 2.6E-11 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 22 | 75 | 12.99088 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 37 | 46 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28270.1 | RING membrane-anchor 2. Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro. | 0 |
| RefSeq | XP_006412976.1 | E3 ubiquitin-protein ligase RMA2 [Eutrema salsugineum] | 0 |
| P93030 | E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1 | 0 | |
| TrEMBL | V4LUV9 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026313mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology